PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g04600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 517aa    MW: 57415.4 Da    PI: 7.7276
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g04600.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.91e-12148203155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d+   g  ++   + ++g f+ta  Aa+a+++a+ k++g
  Vradi11g04600.1 148 SQYRGVTFYRRTGRWESHIWDC---GkqVYlgEYSPCGGFDTAHAAARAYDRAAIKFRG 203
                      78*******************6...335335599999999****************997 PP

2AP243.86.6e-14246296155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Vradi11g04600.1 246 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 296
                      89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-7148203IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-12148212IPR016177DNA-binding domain
SMARTSM003807.3E-28149217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-12149211IPR001471AP2/ERF domain
PROSITE profilePS5103215.013149211IPR001471AP2/ERF domain
PfamPF008471.4E-9246296IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-17246306IPR016177DNA-binding domain
CDDcd000189.90E-25246306No hitNo description
PROSITE profilePS5103215.461247304IPR001471AP2/ERF domain
SMARTSM003803.1E-31247310IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-16247304IPR001471AP2/ERF domain
PRINTSPR003674.9E-6248259IPR001471AP2/ERF domain
PRINTSPR003674.9E-6286306IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MWDLNDSPDQ RKDYESEGCS SLDDDKGRRV GYVSNSSSSA VVLEDGLEEE DSDRGGSRTL  60
ERKSSKIFGF SVTHNDSDHP PVTQQFFSVE DSDLPVSEAV AVGGGSSFPQ AHWVGVKFRQ  120
SETLGPGKSV KTSEPIKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGEYSP  180
CGGFDTAHAA ARAYDRAAIK FRGVEADINF NIEDYEEDLK QMNNLTKEEF VHVLRRQSTG  240
FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE IEAARAYDKA AIKCNGKEAV  300
TNFDPSIYDN ELNSDSSGVA ADHNLDLSLG NLSSRRGNGQ ISGNHFPNSA SDQHLPPASN  360
WRNGGTKPKV HLVNILPKPC DRNNMEAYAR DWLGESETLR LLNQTHLQSP TTKEMHRYGP  420
YRSPAEPQLS HSFARLHPPN FHVGTPSTII ILLLGHAFNF NDRRWSWVPS SSSNGGRIGS  480
DLSLSMSDQQ QWQAGHPHLL ATAAASSGFP PQIRPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520981.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotP479271e-125AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0L9UR090.0A0A0L9UR09_PHAAN; Uncharacterized protein
STRINGGLYMA01G39520.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37843463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-125AP2 family protein